If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ), 'gf_id' => 'HOM05D000647', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000647' ), 'data_identifier' => 'HOM05D000647', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000647', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '880', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08770' => 'bna', 'A01p16400' => 'bna', 'A02p12410' => 'bna', 'A02p28190' => 'bna', 'A02p40110' => 'bna', 'A03p18950' => 'bna', 'A03p21420' => 'bna', 'A03p58870' => 'bna', 'A05p07480' => 'bna', 'A06p47530' => 'bna', 'A08p19710' => 'bna', 'A08p19720' => 'bna', 'A08p37120' => 'bna', 'A09p68060' => 'bna', 'A10p09030' => 'bna', 'Aa31LG11G4000' => 'aar', 'Aa31LG1G20780' => 'aar', 'Aa31LG2G21180' => 'aar', 'Aa31LG2G21190' => 'aar', 'Aa31LG3G7770' => 'aar', 'Aa31LG5G23330' => 'aar', 'Aa31LG5G3250' => 'aar', 'Aa31LG7G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3268' => 'aag', 'Actinidia09522' => 'ach', 'Actinidia11489' => 'ach', 'Actinidia13605' => 'ach', 'Actinidia17506' => 'ach', 'Actinidia29015' => 'ach', 'Actinidia31676' => 'ach', 'Actinidia32109' => 'ach', 'Actinidia35813' => 'ach', 'Actinidia39771' => 'ach', 'Ah.08g209150' => 'amhyb', 'Ah.09g230400' => 'amhyb', 'Ah.13g066350' => 'amhyb', 'Ah.14g083410' => 'amhyb', 'AL1G13650' => 'aly', 'AL4G17250' => 'aly', 'AL4G35870' => 'aly', 'AL6G36360' => 'aly', 'AL6G36370' => 'aly', 'AL6G36400' => 'aly', 'AL7G23180' => 'aly', 'AL7G23190' => 'aly', 'AL7G23200' => 'aly', 'AL7G28000' => 'aly', 'AL8G16060' => 'aly', 'AL8G25520' => 'aly', 'Aqoxy239s002' => 'aox', 'Aqoxy2G03738' => 'aox', 'Aqoxy3G02761' => 'aox', 'Aqoxy4G03300' => 'aox', 'Aqoxy7G03964' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2V1UZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7AQZ6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VP81W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.END433' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5BSUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GYY3NL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJ9H1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1TGGH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RN0AMT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RZ4SVU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9LXYY' => 'arhy', 'AT1G04040' => 'ath', 'AT2G38600' => 'ath', 'AT4G25150' => 'ath', 'AT4G29260' => 'ath', 'AT4G29270' => 'ath', 'AT5G24770' => 'ath', 'AT5G24780' => 'ath', 'AT5G44020' => 'ath', 'AT5G51260' => 'ath', 'ATR0057G023' => 'atr', 'ATR0705G009' => 'atr', 'ATR0736G195' => 'atr', 'ATR1127G147' => 'atr', 'Atru.chr1.3550' => 'acertr', 'Atru.chr1.3551' => 'acertr', 'Atru.chr1.866' => 'acertr', 'Atru.chr5.1816' => 'acertr', 'Atru.chr7.1499' => 'acertr', 'Atru.chr8.77' => 'acertr', 'AUR62002239' => 'cqu', 'AUR62006442' => 'cqu', 'AUR62015451' => 'cqu', 'AUR62021375' => 'cqu', 'AUR62021376' => 'cqu', 'AUR62022235' => 'cqu', 'AUR62029795' => 'cqu', 'AUR62031948' => 'cqu', 'AUR62031949' => 'cqu', 'AUR62033291' => 'cqu', 'AUR62033292' => 'cqu', 'AUR62033293' => 'cqu', 'AUR62041372' => 'cqu', 'BcaB01g03673' => 'bca', 'BcaB01g03915' => 'bca', 'BcaB02g09185' => 'bca', 'BcaB03g12603' => 'bca', 'BcaB03g12604' => 'bca', 'BcaB05g24014' => 'bca', 'BcaB07g29922' => 'bca', 'BcaB07g30545' => 'bca', 'BcaB07g30981' => 'bca', 'BcaB08g35483' => 'bca', 'BcaC01g01166' => 'bca', 'BcaC01g01167' => 'bca', 'BcaC01g05527' => 'bca', 'BcaC02g12010' => 'bca', 'BcaC03g14617' => 'bca', 'BcaC03g16624' => 'bca', 'BcaC03g17947' => 'bca', 'BcaC03g17948' => 'bca', 'BcaC04g20710' => 'bca', 'BcaC04g21875' => 'bca', 'BcaC06g31661' => 'bca', 'BcaC06g34602' => 'bca', 'BcaC07g36935' => 'bca', 'BcaC07g42213' => 'bca', 'BcaC07g42214' => 'bca', 'BcaC08g45157' => 'bca', 'BcaC09g50804' => 'bca', 'BcaC09g51711' => 'bca', 'BcaNung00473' => 'bca', 'BcaNung01319' => 'bca', 'BcaNung01323' => 'bca', 'BcaNung04004' => 'bca', 'BcaNung05490' => 'bca', 'BcaNung05491' => 'bca', 'BcaNung06134' => 'bca', 'BolC1t00985H' => 'bol', 'BolC1t01986H' => 'bol', 'BolC2t10127H' => 'bol', 'BolC2t10500H' => 'bol', 'BolC2t12062H' => 'bol', 'BolC3t14927H' => 'bol', 'BolC3t17887H' => 'bol', 'BolC3t21243H' => 'bol', 'BolC3t21244H' => 'bol', 'BolC4t22485H' => 'bol', 'BolC6t37947H' => 'bol', 'BolC7t43193H' => 'bol', 'BolC7t46161H' => 'bol', 'BolC8t46887H' => 'bol', 'BolC8t52777H' => 'bol', 'BolC9t55529H' => 'bol', 'BolC9t56898H' => 'bol', 'BraA01t00827Z' => 'bra', 'BraA01t01595Z' => 'bra', 'BraA02t06305Z' => 'bra', 'BraA02t07855Z' => 'bra', 'BraA02t08977Z' => 'bra', 'BraA03t11152Z' => 'bra', 'BraA03t11378Z' => 'bra', 'BraA03t14947Z' => 'bra', 'BraA05t19713Z' => 'bra', 'BraA06t27622Z' => 'bra', 'BraA08t33929Z' => 'bra', 'BraA08t33930Z' => 'bra', 'BraA08t35611Z' => 'bra', 'BraA09t37680Z' => 'bra', 'BraA09t42141Z' => 'bra', 'BraA10t42986Z' => 'bra', 'C01p20550' => 'bna', 'C02p20520' => 'bna', 'C02p41140' => 'bna', 'C02p44590' => 'bna', 'C02p60080' => 'bna', 'C03p25330' => 'bna', 'C03p89330' => 'bna', 'C04p08950' => 'bna', 'C06p27800' => 'bna', 'C07p26640' => 'bna', 'C07p56830' => 'bna', 'C08p00890' => 'bna', 'C08p34320' => 'bna', 'C08p52500' => 'bna', 'C09p26270' => 'bna', 'C09p40010' => 'bna', 'CAN.G1143.20' => 'can', 'CAN.G1143.21' => 'can', 'CAN.G1143.22' => 'can', 'CAN.G220.80' => 'can', 'CAN.G228.1' => 'can', 'CAN.G330.1' => 'can', 'CAN.G565.2' => 'can', 'CAN.G635.40' => 'can', 'CAN.G635.42' => 'can', 'CAN.G65.50' => 'can', 'CANSAT01G0164' => 'cansat', 'CANSAT21G0384' => 'cansat', 'CANSAT21G0644' => 'cansat', 'CANSAT56G1136' => 'cansat', 'CANSAT56G1461' => 'cansat', 'CANSAT56G1516' => 'cansat', 'CANSAT56G3029' => 'cansat', 'CANSAT56G3048' => 'cansat', 'CANSAT56G3330' => 'cansat', 'CANSAT78G0104' => 'cansat', 'CARHR003390' => 'chi', 'CARHR133270' => 'chi', 'CARHR179270' => 'chi', 'CARHR188680' => 'chi', 'CARHR188700' => 'chi', 'CARHR188710' => 'chi', 'CARHR188720' => 'chi', 'CARHR188750' => 'chi', 'CARHR232540' => 'chi', 'CARHR237010' => 'chi', 'CARHR237020' => 'chi', 'CARHR256770' => 'chi', 'Carub.0001s0320' => 'cru', 'Carub.0004s2058' => 'cru', 'Carub.0006s2262' => 'cru', 'Carub.0006s2263' => 'cru', 'Carub.0007s1130' => 'cru', 'Carub.0007s1131' => 'cru', 'Carub.0007s1134' => 'cru', 'Carub.0007s1588' => 'cru', 'Carub.0008s0452' => 'cru', 'Carub.0008s1129' => 'cru', 'Ca_09805_v3' => 'car', 'Ca_23109_v3' => 'car', 'Ca_24078_v3' => 'car', 'Ca_25593_v3' => 'car', 'Ca_30486_v3' => 'car', 'CBR_g234' => 'cbr', 'Cc01_g17910' => 'ccan', 'Cc02_g04640' => 'ccan', 'Cc03_g06070' => 'ccan', 'Cc03_g06110' => 'ccan', 'Cc04_g02440' => 'ccan', 'Cc04_g03290' => 'ccan', 'Cc04_g03300' => 'ccan', 'Cc06_g10700' => 'ccan', 'CDE05G0191' => 'cde', 'CDE05G0838' => 'cde', 'CDE05G3500' => 'cde', 'CDE05G3663' => 'cde', 'CDE06G0055' => 'cde', 'CDE06G1655' => 'cde', 'Cfa003157' => 'cfa', 'Cfa003158' => 'cfa', 'Cfa003635' => 'cfa', 'Cfa003636' => 'cfa', 'Cfa019644' => 'cfa', 'Ciclev10005566m.g' => 'ccl', 'Ciclev10009222m.g' => 'ccl', 'Ciclev10012544m.g' => 'ccl', 'Ciclev10021795m.g' => 'ccl', 'Ciclev10026223m.g' => 'ccl', 'Ciclev10027566m.g' => 'ccl', 'Ciclev10027612m.g' => 'ccl', 'CiPaw.01G230200' => 'cil', 'CiPaw.01G230300' => 'cil', 'CiPaw.03G221800' => 'cil', 'CiPaw.03G269800' => 'cil', 'CiPaw.07G185600' => 'cil', 'CiPaw.10G166000' => 'cil', 'ClCG01G004660' => 'cla', 'ClCG04G006240' => 'cla', 'ClCG05G004060' => 'cla', 'ClCG07G001330' => 'cla', 'ClCG11G002000' => 'cla', 'COL.COLO4_02758' => 'col', 'COL.COLO4_10586' => 'col', 'COL.COLO4_18280' => 'col', 'COL.COLO4_27632' => 'col', 'COL.COLO4_30532' => 'col', 'COL.COLO4_37370' => 'col', 'Cpa.g.sc13.267' => 'cpa', 'Cpa.g.sc72.59' => 'cpa', 'Cpa.g.sc78.37' => 'cpa', 'Cpa.g.sc87.10' => 'cpa', 'Cpa.g.sc87.5' => 'cpa', 'Cre16.g686500' => 'cre', 'CsaV3_2G001740' => 'csa', 'CsaV3_2G001750' => 'csa', 'CsaV3_2G001760' => 'csa', 'CsaV3_3G011770' => 'csa', 'CsaV3_4G027320' => 'csa', 'CsaV3_5G004860' => 'csa', 'CSS0000747' => 'camsi', 'CSS0002361' => 'camsi', 'CSS0008074' => 'camsi', 'CSS0008090' => 'camsi', 'CSS0012710' => 'camsi', 'CSS0015592' => 'camsi', 'CSS0015852' => 'camsi', 'CSS0016270' => 'camsi', 'CSS0019118' => 'camsi', 'CSS0019400' => 'camsi', 'CSS0022202' => 'camsi', 'CSS0025550' => 'camsi', 'CSS0028781' => 'camsi', 'CSS0030342' => 'camsi', 'CSS0032840' => 'camsi', 'CSS0033807' => 'camsi', 'CSS0034366' => 'camsi', 'CSS0048668' => 'camsi', 'DCAR_009455' => 'dca', 'DCAR_012024' => 'dca', 'DCAR_015326' => 'dca', 'DCAR_020173' => 'dca', 'DCAR_020174' => 'dca', 'DCAR_028645' => 'dca', 'Dinv06587' => 'din', 'Dinv16391' => 'din', 'Dinv16949' => 'din', 'Dinv25362' => 'din', 'Dinv29810' => 'din', 'Dinv30425' => 'din', 'Dinv36714' => 'din', 'Dinv37965' => 'din', 'Dinv42266' => 'din', 'Duzib068G0642' => 'dzi', 'Duzib138G0594' => 'dzi', 'Duzib150G1302' => 'dzi', 'Duzib151G0126' => 'dzi', 'Duzib160G0421' => 'dzi', 'Duzib187G0223' => 'dzi', 'Duzib211G0046' => 'dzi', 'Duzib251G0197' => 'dzi', 'Duzib268G1507' => 'dzi', 'ECA232G0983' => 'eca', 'ECA232G1419' => 'eca', 'ECA232G3086' => 'eca', 'ECA232G4445' => 'eca', 'ECA234G3244' => 'eca', 'ECA238G4661' => 'eca', 'ECA240G3481' => 'eca', 'EL10Ac3g05876' => 'bvu', 'EL10Ac7g17132' => 'bvu', 'EL10Ac8g18355' => 'bvu', 'EL10Ac8g18356' => 'bvu', 'EL10Ac9g21190' => 'bvu', 'Eucgr.A00786' => 'egr', 'Eucgr.A00787' => 'egr', 'Eucgr.A00788' => 'egr', 'Eucgr.A00789' => 'egr', 'Eucgr.A00791' => 'egr', 'Eucgr.A02919' => 'egr', 'Eucgr.C00961' => 'egr', 'Eucgr.H02960' => 'egr', 'Eucgr.J02693' => 'egr', 'Eucgr.J02694' => 'egr', 'Eucgr.J02696' => 'egr', 'Eucgr.J02927' => 'egr', 'Eucgr.J02928' => 'egr', 'Eucgr.J02929' => 'egr', 'FAN02G3175' => 'fan', 'FAN02G4266' => 'fan', 'FAN03G2172' => 'fan', 'FAN05G0021' => 'fan', 'FAN05G4970' => 'fan', 'FAN06G0519' => 'fan', 'FAN06G0621' => 'fan', 'FAN09G3664' => 'fan', 'FAN09G3927' => 'fan', 'FAN10G2898' => 'fan', 'FAN12G2480' => 'fan', 'FAN15G2101' => 'fan', 'FAN19G2942' => 'fan', 'FAN20G1045' => 'fan', 'FAN23G0130' => 'fan', 'FAN24G0129' => 'fan', 'FAN24G3191' => 'fan', 'FAN26G1756' => 'fan', 'FAN26G1859' => 'fan', 'FAN27G1324' => 'fan', 'FAN28G1481' => 'fan', 'FvH4_1g06500' => 'fve', 'FvH4_2g20720' => 'fve', 'FvH4_6g09510' => 'fve', 'FvH4_6g32551' => 'fve', 'FvH4_6g32560' => 'fve', 'FvH4_6g32570' => 'fve', 'FvH4_7g27010' => 'fve', 'Glyma.03G001500' => 'gma', 'Glyma.03G001600' => 'gma', 'Glyma.03G166500' => 'gma', 'Glyma.07G014500' => 'gma', 'Glyma.07G014600' => 'gma', 'Glyma.07G014700' => 'gma', 'Glyma.07G125900' => 'gma', 'Glyma.08G200000' => 'gma', 'Glyma.08G200100' => 'gma', 'Glyma.08G200200' => 'gma', 'Glyma.08G231000' => 'gma', 'Glyma.10G134700' => 'gma', 'Glyma.15G218400' => 'gma', 'Glyma.16G220700' => 'gma', 'Glyma.16G220900' => 'gma', 'Glyma.19G167600' => 'gma', 'Glyma.20G085500' => 'gma', 'Gohir.A02G002200' => 'ghi', 'Gohir.A06G068500' => 'ghi', 'Gohir.A07G043000' => 'ghi', 'Gohir.A07G150800' => 'ghi', 'Gohir.A10G152600' => 'ghi', 'Gohir.A13G027100' => 'ghi', 'Gohir.D02G002500' => 'ghi', 'Gohir.D06G067100' => 'ghi', 'Gohir.D07G047300' => 'ghi', 'Gohir.D07G157400' => 'ghi', 'Gohir.D10G113600' => 'ghi', 'Gohir.D13G025900' => 'ghi', 'Gorai.001G050400' => 'gra', 'Gorai.001G180400' => 'gra', 'Gorai.005G003000' => 'gra', 'Gorai.010G078600' => 'gra', 'Gorai.011G125400' => 'gra', 'Gorai.013G029100' => 'gra', 'GSVIVG01014022001' => 'vvi', 'GSVIVG01015277001' => 'vvi', 'GSVIVG01016112001' => 'vvi', 'GSVIVG01016957001' => 'vvi', 'GSVIVG01028404001' => 'vvi', 'GSVIVG01029880001' => 'vvi', 'HanXRQChr02g0059321' => 'han', 'HanXRQChr04g0111901' => 'han', 'HanXRQChr07g0205521' => 'han', 'HanXRQChr09g0276101' => 'han', 'HanXRQChr09g0276151' => 'han', 'HanXRQChr09g0276191' => 'han', 'HanXRQChr09g0276201' => 'han', 'HanXRQChr12g0355181' => 'han', 'HanXRQChr15g0463341' => 'han', 'HanXRQChr15g0485891' => 'han', 'Haze_15861' => 'cav', 'Haze_15862' => 'cav', 'Haze_22189' => 'cav', 'Haze_24690' => 'cav', 'Haze_24691' => 'cav', 'Haze_25845' => 'cav', 'Hma1.2p1_0112F.1_g054640' => 'hma', 'Hma1.2p1_0174F.1_g076710' => 'hma', 'Hma1.2p1_0430F.1_g151260' => 'hma', 'Hma1.2p1_0663F.1_g198480' => 'hma', 'Hma1.2p1_1305F.1_g274620' => 'hma', 'HPP92_006388' => 'vpl', 'HPP92_006389' => 'vpl', 'HPP92_012922' => 'vpl', 'HPP92_013029' => 'vpl', 'HPP92_013030' => 'vpl', 'HPP92_020777' => 'vpl', 'Hund04570' => 'sun', 'Hund07616' => 'sun', 'Hund09080' => 'sun', 'Hund19743' => 'sun', 'Hund26294' => 'sun', 'Lalb_Chr01g0007301' => 'lal', 'Lalb_Chr06g0169481' => 'lal', 'Lalb_Chr13g0290351' => 'lal', 'Lalb_Chr13g0291001' => 'lal', 'Lalb_Chr21g0312481' => 'lal', 'Lalb_Chr24g0394011' => 'lal', 'Lalb_Chr25g0280201' => 'lal', 'Lalb_Chr25g0280231' => 'lal', 'Lalb_Chr25g0280431' => 'lal', 'Lj1A976T73' => 'lonja', 'Lj2A57G78' => 'lonja', 'Lj2C1144G7' => 'lonja', 'Lj2g0011778' => 'lja', 'Lj3A649T62' => 'lonja', 'Lj3g0002011' => 'lja', 'Lj3g0002829' => 'lja', 'Lj3g0010156' => 'lja', 'Lj3g0025679' => 'lja', 'Lj3g0027815' => 'lja', 'Lj4C370G3' => 'lonja', 'Lj5C51T9' => 'lonja', 'Lj5g0024354' => 'lja', 'Lj6g0016502' => 'lja', 'Lj7A579G35' => 'lonja', 'Lj7A579T39' => 'lonja', 'Lj7A668T74' => 'lonja', 'Lj7C579T17' => 'lonja', 'Lj7C580T2' => 'lonja', 'Lj7C668T4' => 'lonja', 'Lj8C46T3' => 'lonja', 'Lsat_1_v5_gn_2_127921' => 'lsa', 'Lsat_1_v5_gn_4_97800' => 'lsa', 'Lsat_1_v5_gn_5_144781' => 'lsa', 'Lsat_1_v5_gn_5_42780' => 'lsa', 'Lsat_1_v5_gn_6_66480' => 'lsa', 'Lsat_1_v5_gn_9_36200' => 'lsa', 'Lsat_1_v5_gn_9_50860' => 'lsa', 'Manes.06G132000' => 'mes', 'Manes.08G169200' => 'mes', 'Manes.09G122300' => 'mes', 'Manes.11G032000' => 'mes', 'Manes.12G035700' => 'mes', 'Manes.15G045000' => 'mes', 'Manes.16G107100' => 'mes', 'Mapoly0028s0005' => 'mpo', 'Mapoly0047s0071' => 'mpo', 'Mapoly0188s0019' => 'mpo', 'MBI04_g00379_MAGBIO' => 'mbi', 'MBI04_g06999_MAGBIO' => 'mbi', 'MBI04_g38760_MAGBIO' => 'mbi', 'MBI04_g44254_MAGBIO' => 'mbi', 'MBI10_g30719_MAGBIO' => 'mbi', 'MBI10_g44040_MAGBIO' => 'mbi', 'MBI15_g17398_MAGBIO' => 'mbi', 'MBI15_g36676_MAGBIO' => 'mbi', 'MD00G1060800' => 'mdo', 'MD01G1177700' => 'mdo', 'MD02G1068300' => 'mdo', 'MD04G1176900' => 'mdo', 'MD06G1061800' => 'mdo', 'MD07G1249500' => 'mdo', 'MD09G1200500' => 'mdo', 'MD09G1200900' => 'mdo', 'MD09G1201200' => 'mdo', 'MD12G1192100' => 'mdo', 'Medtr1g045120' => 'mtr', 'Medtr1g073610' => 'mtr', 'Medtr6g090070' => 'mtr', 'Medtr7g103500' => 'mtr', 'Medtr8g005410' => 'mtr', 'Medtr8g005420' => 'mtr', 'Medtr8g005530' => 'mtr', 'Medtr8g006575' => 'mtr', 'Medtr8g006600' => 'mtr', 'Medtr8g006690' => 'mtr', 'Medtr8g013075' => 'mtr', 'Medtr8g013080' => 'mtr', 'Medtr8g013090' => 'mtr', 'Medtr8g014640' => 'mtr', 'Medtr8g014650' => 'mtr', 'Medtr8g046230' => 'mtr', 'Medtr8g046260' => 'mtr', 'Medtr8g466370' => 'mtr', 'Medtr8g466390' => 'mtr', 'Medtr8g466410' => 'mtr', 'MELO3C004598.2' => 'cme', 'MELO3C004599.2' => 'cme', 'MELO3C004600.2' => 'cme', 'MELO3C004601.2' => 'cme', 'MELO3C005493.2' => 'cme', 'MELO3C006383.2' => 'cme', 'MELO3C025251.2' => 'cme', 'Migut.F00517' => 'egut', 'Migut.F01194' => 'egut', 'Migut.J00017' => 'egut', 'Migut.K00555' => 'egut', 'Migut.N03086' => 'egut', 'MSTRG.138' => 'ama', 'MSTRG.21468' => 'ama', 'MSTRG.22627' => 'ama', 'MSTRG.22628' => 'ama', 'MSTRG.26396' => 'ama', 'MSTRG.5481' => 'ama', 'Nitab4.5_0000048g0300' => 'nta', 'Nitab4.5_0000262g0060' => 'nta', 'Nitab4.5_0000300g0160' => 'nta', 'Nitab4.5_0000300g0180' => 'nta', 'Nitab4.5_0000448g0030' => 'nta', 'Nitab4.5_0000845g0080' => 'nta', 'Nitab4.5_0001051g0060' => 'nta', 'Nitab4.5_0001876g0040' => 'nta', 'Nitab4.5_0001991g0040' => 'nta', 'Nitab4.5_0001991g0060' => 'nta', 'Nitab4.5_0002573g0080' => 'nta', 'Nitab4.5_0003173g0030' => 'nta', 'Nitab4.5_0004969g0070' => 'nta', 'Nitab4.5_0004969g0100' => 'nta', 'Nitab4.5_0004969g0110' => 'nta', 'Nitab4.5_0005085g0050' => 'nta', 'Nitab4.5_0005495g0010' => 'nta', 'Nitab4.5_0006022g0020' => 'nta', 'Nitab4.5_0011535g0010' => 'nta', 'Nitab4.5_0014618g0010' => 'nta', 'Nn1g00892' => 'nnu', 'Nn1g02937' => 'nnu', 'Nn2g10240' => 'nnu', 'Nn3g16813' => 'nnu', 'Nn6g33846' => 'nnu', 'Nn6g35354' => 'nnu', 'Nn7g37583' => 'nnu', 'Nn7g37586' => 'nnu', 'Nn8g39029' => 'nnu', 'Oeu000404.1' => 'oeu', 'Oeu006091.1' => 'oeu', 'Oeu011483.1' => 'oeu', 'Oeu011486.1' => 'oeu', 'Oeu011487.1' => 'oeu', 'Oeu015427.1' => 'oeu', 'Oeu021688.1' => 'oeu', 'Oeu022465.1' => 'oeu', 'Oeu032272.1' => 'oeu', 'Oeu035178.1' => 'oeu', 'Oeu048303.1' => 'oeu', 'Oeu052071.1' => 'oeu', 'Os01g0191200' => 'osa', 'Os01g0298500' => 'osa', 'Os03g0332533' => 'osa', 'Os05g0189300' => 'osa', 'Os05g0189900' => 'osa', 'Os05g0190300' => 'osa', 'Os05g0190500' => 'osa', 'Os05g0191500' => 'osa', 'Os05g0191700' => 'osa', 'Os05g0192100' => 'osa', 'Os06g0139800' => 'osa', 'Os06g0559500' => 'osa', 'Os07g0681200' => 'osa', 'Peaxi162Scf00033g03015' => 'pax', 'Peaxi162Scf00038g01132' => 'pax', 'Peaxi162Scf00168g01127' => 'pax', 'Peaxi162Scf00207g01227' => 'pax', 'Peaxi162Scf00207g01235' => 'pax', 'Peaxi162Scf00271g00728' => 'pax', 'Peaxi162Scf00304g01115' => 'pax', 'Peaxi162Scf00415g00912' => 'pax', 'Peaxi162Scf00732g00140' => 'pax', 'PGR004G1353' => 'pgr', 'PGR004G1705' => 'pgr', 'PGR031G1152' => 'pgr', 'PGR042G1764' => 'pgr', 'PGR102G1798' => 'pgr', 'PGR142G3876' => 'pgr', 'PGSC0003DMG400002523' => 'stu', 'PGSC0003DMG400016494' => 'stu', 'PGSC0003DMG400017152' => 'stu', 'PGSC0003DMG400018838' => 'stu', 'PGSC0003DMG400018839' => 'stu', 'PGSC0003DMG400021596' => 'stu', 'PGSC0003DMG400042033' => 'stu', 'PGSC0003DMG401016495' => 'stu', 'PGSC0003DMG401029142' => 'stu', 'PGSC0003DMG402016495' => 'stu', 'Phvul.001G164000' => 'pvu', 'Phvul.004G174200' => 'pvu', 'Phvul.007G270800' => 'pvu', 'Phvul.010G058800' => 'pvu', 'Phvul.010G059000' => 'pvu', 'Phvul.010G144200' => 'pvu', 'Phvul.010G144300' => 'pvu', 'Phvul.010G144600' => 'pvu', 'Phvul.011G182400' => 'pvu', 'Potri.001G191000' => 'ptr', 'Potri.002G257700' => 'ptr', 'Potri.004G232900' => 'ptr', 'Potri.006G110900' => 'ptr', 'Potri.006G152900' => 'ptr', 'Potri.010G066500' => 'ptr', 'Potri.016G139700' => 'ptr', 'Pp3c16_11020' => 'ppa', 'Pp3c16_1470' => 'ppa', 'Pp3c26_14760' => 'ppa', 'Pp3c4_27860' => 'ppa', 'Pp3c5_13290' => 'ppa', 'PRCOL_00005276' => 'pco', 'Prupe.1G046900' => 'ppe', 'Prupe.2G273200' => 'ppe', 'Prupe.3G057000' => 'ppe', 'Prupe.3G057100' => 'ppe', 'Prupe.3G245200' => 'ppe', 'Prupe.6G296600' => 'ppe', 'Prupe.7G217300' => 'ppe', 'Prupe.8G216700' => 'ppe', 'Psat1g048640' => 'psa', 'Psat2g191000' => 'psa', 'Psat4g172440' => 'psa', 'Psat4g187240' => 'psa', 'Psat4g196880' => 'psa', 'Psat4g196960' => 'psa', 'Psat4g203480' => 'psa', 'Psat6g106120' => 'psa', 'Psat6g129920' => 'psa', 'PSO063G5201' => 'pso', 'PSO210G0568' => 'pso', 'PSO210G0616' => 'pso', 'PSO210G1307' => 'pso', 'PSO210G1480' => 'pso', 'PSO210G2115' => 'pso', 'PSO210G4620' => 'pso', 'PSO210G5223' => 'pso', 'PSO210G5531' => 'pso', 'PSO210G6220' => 'pso', 'PSO782G4154' => 'pso', 'QL02p040625' => 'qlo', 'QL05p019130' => 'qlo', 'QL05p019190' => 'qlo', 'QL05p019604' => 'qlo', 'QL07p031254' => 'qlo', 'QL07p031640' => 'qlo', 'QL09p028150' => 'qlo', 'QL09p041145' => 'qlo', 'RcHm_v2.0_Chr1g0373811' => 'rch', 'RcHm_v2.0_Chr2g0092251' => 'rch', 'RcHm_v2.0_Chr2g0140951' => 'rch', 'RcHm_v2.0_Chr2g0140961' => 'rch', 'RcHm_v2.0_Chr2g0140991' => 'rch', 'RcHm_v2.0_Chr2g0141021' => 'rch', 'RcHm_v2.0_Chr3g0460091' => 'rch', 'RcHm_v2.0_Chr3g0460101' => 'rch', 'RcHm_v2.0_Chr4g0395031' => 'rch', 'RcHm_v2.0_Chr4g0395081' => 'rch', 'RcHm_v2.0_Chr4g0395141' => 'rch', 'RcHm_v2.0_Chr6g0286901' => 'rch', 'Rhsim01G0261100' => 'rsi', 'Rhsim04G0173100' => 'rsi', 'Rhsim05G0028200' => 'rsi', 'Rhsim05G0028300' => 'rsi', 'Rhsim05G0232700' => 'rsi', 'Rhsim08G0228500' => 'rsi', 'Rhsim12G0203600' => 'rsi', 'Rhsim12G0203700' => 'rsi', 'Sabra01G0150600' => 'sbr', 'Sabra01G0178400' => 'sbr', 'Sabra02G0196100' => 'sbr', 'Sabra04G0156300' => 'sbr', 'Sabra06G0086200' => 'sbr', 'Sabra06G0121100' => 'sbr', 'Sabra10G0040900' => 'sbr', 'SalBow1G2966' => 'sbo', 'SalBow1G4826' => 'sbo', 'SalBow2G0441' => 'sbo', 'SalBow2G3469' => 'sbo', 'SalBow2G3537' => 'sbo', 'SalBow5G1341' => 'sbo', 'SalBow5G4569' => 'sbo', 'Sc07g0006010' => 'sci', 'Sc07g0006030' => 'sci', 'Sc08g0008100' => 'sci', 'Sc13g0006180' => 'sci', 'Sc13g0006570' => 'sci', 'Sc13g0006600' => 'sci', 'Sc14g0001520' => 'sci', 'Sed0000037' => 'sed', 'Sed0004748' => 'sed', 'Sed0009645' => 'sed', 'Sed0018182' => 'sed', 'Sed0024157' => 'sed', 'Sed0026099' => 'sed', 'Sed0028008' => 'sed', 'SEGI_01467' => 'sgi', 'SEGI_04613' => 'sgi', 'SEGI_05987' => 'sgi', 'SEGI_12568' => 'sgi', 'SEGI_12891' => 'sgi', 'SEGI_28047' => 'sgi', 'SEGI_36819' => 'sgi', 'SEGI_37087' => 'sgi', 'SEGI_39694' => 'sgi', 'SGA_v2.0_scaffold179G39581' => 'sas', 'SGA_v2.0_scaffold19G08703' => 'sas', 'SGA_v2.0_scaffold56G19918' => 'sas', 'SGA_v2.0_scaffold60G20807' => 'sas', 'SGA_v2.0_scaffold85G26591' => 'sas', 'SHI14068' => 'shi', 'SMO199G0124' => 'smo', 'SMO200G0261' => 'smo', 'SMO234G0065' => 'smo', 'SMO358G0182' => 'smo', 'SMO358G0209' => 'smo', 'SMO361G0684' => 'smo', 'SMO361G0707' => 'smo', 'SMO364G0257' => 'smo', 'SMO367G0531' => 'smo', 'Solyc03g093470.3' => 'sly', 'Solyc03g121100.4' => 'sly', 'Solyc06g034110.3' => 'sly', 'Solyc06g062370.4' => 'sly', 'Solyc06g062380.3' => 'sly', 'Solyc06g062390.3' => 'sly', 'Solyc08g066530.4' => 'sly', 'Solyc09g090600.3' => 'sly', 'Sopen03g024300' => 'spe', 'Sopen03g039930' => 'spe', 'Sopen06g010770' => 'spe', 'Sopen06g021840' => 'spe', 'Sopen06g021850' => 'spe', 'Sopen06g021860' => 'spe', 'Sopen06g021870' => 'spe', 'Sopen08g020360' => 'spe', 'Sopen09g033540' => 'spe', 'Sp1g02880' => 'spa', 'Sp2g08860' => 'spa', 'Sp4g16290' => 'spa', 'Sp4g20930' => 'spa', 'Sp6g13450' => 'spa', 'Sp7g23150' => 'spa', 'Sp7g27180' => 'spa', 'Sp7g27190' => 'spa', 'TAR044G0001' => 'tar', 'TAR362G0070' => 'tar', 'TAR374G1594' => 'tar', 'TAR624G0545' => 'tar', 'TAR624G0571' => 'tar', 'TAR624G1205' => 'tar', 'TAR633G2017' => 'tar', 'TAR636G0194' => 'tar', 'TAR636G0898' => 'tar', 'THA.LOC104801134' => 'tha', 'THA.LOC104806650' => 'tha', 'THA.LOC104808275' => 'tha', 'THA.LOC104811534' => 'tha', 'THA.LOC104814588' => 'tha', 'THA.LOC104814965' => 'tha', 'THA.LOC104815971' => 'tha', 'THA.LOC104820034' => 'tha', 'THA.LOC104820035' => 'tha', 'THA.LOC104823348' => 'tha', 'Thecc.01G252100' => 'tca', 'Thecc.02G309200' => 'tca', 'Thecc.03G149800' => 'tca', 'Thecc.04G148900' => 'tca', 'Thecc.06G101900' => 'tca', 'Thecc.09G097700' => 'tca', 'Thhalv10003258m.g' => 'esa', 'Thhalv10005708m.g' => 'esa', 'Thhalv10008462m.g' => 'esa', 'Thhalv10014448m.g' => 'esa', 'Thhalv10017121m.g' => 'esa', 'Thhalv10025999m.g' => 'esa', 'Thhalv10026000m.g' => 'esa', 'Thhalv10026026m.g' => 'esa', 'TPR.G110' => 'tpr', 'TPR.G15140' => 'tpr', 'TPR.G15144' => 'tpr', 'TPR.G17130' => 'tpr', 'TPR.G23957' => 'tpr', 'TPR.G23997' => 'tpr', 'TPR.G242' => 'tpr', 'TPR.G28841' => 'tpr', 'TPR.G30720' => 'tpr', 'TPR.G31304' => 'tpr', 'TPR.G33512' => 'tpr', 'TPR.G336' => 'tpr', 'TPR.G36172' => 'tpr', 'TWI09G0306' => 'twi', 'TWI12G1278' => 'twi', 'TWI14G0413' => 'twi', 'TWI32G0181' => 'twi', 'TWI32G0559' => 'twi', 'TWI32G0598' => 'twi', 'TWI32G1060' => 'twi', 'TWI32G1138' => 'twi', 'TWI34G0211' => 'twi', 'TWI74G0770' => 'twi', 'TWI75G0668' => 'twi', 'TWI79G1122' => 'twi', 'unitig_0.g265' => 'ugi', 'unitig_0.g266' => 'ugi', 'unitig_37.g12265' => 'ugi', 'unitig_736.g22487' => 'ugi', 'unitig_899.g14850' => 'ugi', 'vmacro08548' => 'vma', 'vmacro09919' => 'vma', 'vmacro10835' => 'vma', 'vmacro10836' => 'vma', 'vmacro10837' => 'vma', 'vmacro14804' => 'vma', 'vmacro18844' => 'vma', 'vmacro20388' => 'vma', 'VMungo0331G0217' => 'vmu', 'VMungo0331G0317' => 'vmu', 'VMungo0331G0762' => 'vmu', 'VMungo0331G0913' => 'vmu', 'VMungo0331G0935' => 'vmu', 'VMungo0331G2065' => 'vmu', 'VMungo0464G1369' => 'vmu', 'VMungo0720G1831' => 'vmu', 'VMungo0720G1984' => 'vmu', 'VMungo1127G0693' => 'vmu', 'VMungo1383G3309' => 'vmu', 'Zm00001eb015870' => 'zma', 'Zm00001eb270230' => 'zma', 'Zm00001eb277460' => 'zma', 'Zm00001eb283450' => 'zma', 'Zm00001eb283460' => 'zma', 'Zm00001eb330770' => 'zma', 'Zm00001eb350080' => 'zma', 'Zm00001eb377540' => 'zma' ) $gf_id = 'HOM05D000647' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000647' ) $data_identifier = 'HOM05D000647' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 12, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 9, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 13, 'bca' => (int) 35, 'bol' => (int) 17, 'bra' => (int) 16, 'can' => (int) 10, 'cansat' => (int) 10, 'chi' => (int) 12, 'cru' => (int) 10, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 18, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 17, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lonja' => (int) 13, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 20, 'cme' => (int) 7, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 20, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 13, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 7, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 9, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 13, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 8, 'vmu' => (int) 11, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb377540' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1